publications / 2019
Absapr 2019·Peer-reviewed

MP78-04 PREDICTING PROSTATE CANCER FOCAL THERAPY ELIGIBILITY WITH MACHINE LEARNING

Zhou, S., Priester, A., Jayadevan, R., Yang, J., Johnson, D., Raman, A., Sarma, K. V., Arnold, C., Ballon, J., Natarajan, S., and Marks, L..
The Journal of Urology, 201(Supplement 4) · apr 2019
Abstract

Introduction and Objectives: Focal therapies such as hemi-gland ablation (HGA) are evolving treatment options for prostate cancer. However, limitations in current diagnostics—biopsy Gleason score, biopsy-determined laterality, MRI, and PSA—may result in improper candidate selection and lead to suboptimal oncologic control. In machine learning, linear classifiers are simple but powerful tools that use logistic regression models to calculate probability, sorting data into one of multiple possible classes. We trained a linear classifier to better predict patient HGA eligibility using spatial information from fusion biopsy.

Methods: We identified patients who received fusion biopsy and radical prostatectomy (RP) at a single institution between May 2011 and March 2018. In addition to standard clinical features, we extracted fusion biopsy features related to core and target locations. These features were used to train a linear classifier to classify patients by HGA eligibility (unilateral intermediate-risk cancer on RP) in a randomized set of patients. We assessed the resulting algorithm’s predictive performance in an independent set of test data, verified with 5-fold cross-validation. The evaluation metric was the area under the curve (AUC) statistic. Accuracy was compared to current eligibility criteria (biopsy-proven unilateral intermediate-risk cancer).

Results: Cross-validation was performed with 144 patients partitioned into 5 data blocks, each block acting once as a test set for an algorithm instance trained by the other 4. The 5 folds yielded reproducible receiver operator characteristic curves with a mean AUC of 0.83±0.07 on test sets. Model accuracy was 76% compared to 67% with current criteria (p=0.03); sensitivity was 68% compared to 44% (p=0.006). Matching sensitivity to that of current criteria, the model’s positive predictive value was 88% compared to 73% (p=0.08). In other words, in this dataset, 27% of patients selected by current criteria harbored undetected advanced disease for which HGA is insufficient: this incidence is halved when candidates are vetted by our model.

Conclusions: A machine learning classifier, trained with fusion biopsy data, outperforms current eligibility criteria in accurately predicting HGA eligibility.

BibTeX
@article{Zhou2019,
  author = {Zhou, S. and Priester, A. and Jayadevan, R. and Yang, J. and Johnson, D. and Raman, A. and Sarma, K. V. and Arnold, C. and Ballon, J. and Natarajan, S. and Marks, L.},
  doi = {10.1097/01.JU.0000557336.01833.27},
  issn = {0022-5347},
  journal = {The Journal of Urology},
  month = apr,
  number = {Supplement 4},
  publisher = {Wolters Kluwer, Philadelphia, PA},
  title = {{MP78-04 PREDICTING PROSTATE CANCER FOCAL THERAPY ELIGIBILITY WITH MACHINE LEARNING}},
  url = {https://www.auajournals.org/doi/abs/10.1097/01.JU.0000557336.01833.27},
  volume = {201},
  year = {2019},
}